Software Developer - Pathogen Informatics

Salary range: £31498 to £39729pa plus excellent benefits

Fixed-term for 2 years

We are seeking to recruit an enthusiastic Software Developer to work within the Pathogen Informatics team at the Wellcome Trust Sanger Institute. The candidate will be responsible for developing backend software infrastructure that will enable biologists to curate and annotate protozoan parasites and pathogenic fungi genomes. Protozoa are responsible for many of the neglected diseases (Sleeping Sickness, Chagas Disease, Leishmaniasis) that disproportionately affect the developing world. Fungi are responsible for more disease each year than malaria or tuberculosis. The candidate will work as part of an international collaboration involving software developers from the EuPathDB project at the Universities of Pennsylvania and Georgia, curators from the University of Liverpool, as well as researchers and developers in the Infection Genomics programme at the Sanger Institute.

The team is based on the principles of agile development so that the software can be rapidly prototyped, updated regularly and receive rapid feedback from scientists in the Infection Genomics programme and wider community. The team employ a testdriven development strategy for all software development projects and strongly promote open source development using Github for all software projects.

Job Reference

Essential Skills

● A degree in a scientific or engineering discipline (or equivalent industrial experience)
● Significant programming experience in either Perl or Python
● Evidence of successful delivery in large or complex software projects and acting as a technical lead in both design and        development
● Experience of object oriented development
● Knowledge and experience of UNIX/LINUX on an advanced level
● Knowledge of relational database systems and manipulation via SQL
● An ability to learn quickly on the job with excellent problem solving and analytical skill
● Must be self-motivated and proactive with ability to manage own workload effectively
● Strong interpersonal and communication skills

Ideal Skills

● Experience and knowledge of genome annotation and curation
● Practical experience with running software on a compute farm
● Experience with agile software development methods
● Experience of test driven development

Other information

The Sanger Institute is a charitably funded research centre focused on understanding the role of genetics in health and disease. We use state of the art large-scale genomic approaches to drive world-leading projects to uncover the basis of genetic and infectious disease. Our goal is to provide results that can be translated into diagnostics, treatments or therapies that reduce global health burdens.

The Institute is located near Cambridge, UK on the stunning Wellcome Genome Campus. This growing and dynamic site is the British hub of genomic science. It hosts the European Bioinformatics Institute (EBI), Open Targets, a Biodata Innovation Centre and host Genomics England Limited’s 100,000 Genomes Sequencing Centre. The Campus is also home to Wellcome Genome Campus Connecting Science. Connecting Science inspires new thinking, sparks conversation and supports learning by drawing on the ground-breaking research taking place on the Campus. Its mission is to enable everyone to explore genomic science and its impact on research, health and society. To help researchers to develop their skills and networks, the Institute hosts a range of scientific seminars with internal and invited speakers, scientific group meetings and skills development workshops.

Our Benefits include: Defined Contribution Pension Scheme, Group Income Protection, Healthcare scheme, Childcare Vouchers, Workplace Nursery and 25 days Annual Leave, increasing by one day per year up to a maximum of 30, plus Bank Holidays. We also have a gym, two cafes, dining facilities, and a free campus bus service. Our thriving Sports and Social Club provides many opportunities to meet with people working across the campus.

Wellcome Trust Sanger Institute welcomes applications from all candidates irrespective of age, disability, gender, gender identity, sexual orientation, nationality, race, religion or belief, or marital or civil partnership status.

Please include a covering letter and CV with your application.

This is a fixed-term 2 year position and closing date for applications is 6th July 2017. Please be aware we will be reviewing application on an ongoing basis so the position may be filled prior to this date.